GRS - Gmod Report System - Chado Genome Report

Gene Report

ACYPI009455

mRNA Name	Scaffold	Start	Stop	Strand
shakB-transcript	EQ122334	48735	60270	MINUS

>shakB-transcript_mRNA
acaatagtccgtactctgtactctgtagcaccgcacggctacacgccgcgtatcgttgccattgataggttgcgctcttgcgccatcgtagtcatcagtg
cctcagtggtcgttccgttccacaactcgttccccgttgttcgcctatcacggtatcacaataatacaatattatattaatttaataaaatagataataa
taatacaacgtctattcgtctcaaacaacatttttttttcaataacgttcttgattcttatttcttcctacccacggtaattaatcaaataactgatgca
cgcgtatctcctccccaactgttgaagaggtgcaggtacgatcacgactgtttctcgccgtcgtcgtggatttggggcgtcatctacgacgtgccgtttg
actttttcgctagagaagcttagttcgtatagggtgtacatttaaacaaatcactcaaactaggtagttcgatgataattgtttatactccgatccgttg
tcacacggcgtcttagtgttcagccaacattccctgattccccacactagttgacgttcaaagcatcgatatggaattgttgaggtaacaattttcttct
cggtaaaccatcgccatgtcctctgtatccgtcatggacacactgtccttcacagttttatccgtgatattcatcccgtttctccttttctttctcagca
tcgttctgttggcgtatgtcggaaagacgctaggattacaacagatctatgtggatttcttagttaaagtatttgagtatggacgagaaaatctagaaaa
acagtcgaaaaaacaaacaaaaaaagtcgaagaaactgatagtgaagaaactgatgatgttgatgaactagatttggtgactgaaattgacacggataca
ttaaatgagtcttcaacacatttagagccaataagctcaaatggatctatctctcgtagtaactcgactcatagtctatctaatggaaatgttgataaaa
aaatacagaatggagctccacctttaataagcagacaagatttaatactagttccagatccagatcaaaattacaatggcaacaataatgttaaaactga
aggaggtaaacaaatattacaaagaactcgttcatttaatactttaaaacgagaatttgaacttgccgatgtgcttgattatgtgaaaactggtgttgaa
gcaattatagaggatcaagttacttcacgatttgaagcagaagaacttaagtcatggaatttgttgacaaggacaaatagacattatgagtttatcaatt
ggaaaataacagtcatttggattattggatttattgtaagatatacatttttgttgccattacgtgtgttgatttgtttctttggcgtcatgtggctgtg
gatttgtacattaattgttggttttgtgcctgatagtatgggtaaacgttggctgaatcaaaatacatctattatgtgttttcaagttttagctgcttca
ctatcttcagtcatcacctatcataatcgcgagaacctaccaaagcgaggcatttgtgttgccaatcatacatctccagttgacgtactagtgttggcat
gcgataacccttatgctctgattggccagcgacacggagggtttttaggaatccttcaaagagcattagccagagcttctcctcatttatggtttgaacg
atctgaagctaaagatagagaaattgttgcaatgagacttcgagaacatgtatcaaatccaattaatccaccaatattagtatttcctgaaggaacgtgc
atcaacaacacatctgttatgcagttcaaaaaaggaagttttgaagttggcagtgttatataccctgtagctattaagtatgatccaaggtttggagatg
cattttggaatagtagtaaatactcaatgattcaacatctttatttaatgatgacatcttgggcaattgtttgtgatgtgtggtatttgcctccaatgta
ccaaaatgaaaatgaatcaggtgccgattttgcaaatcgagtaaaacgagtaattgctgatcaaggtggtcttgttgacctagtatgggatggtcaactt
aaacgtaacaaaccgaaaacagaatggaaagaaagacaacaggaagaattcagtaaacgattaaaagtcgaatag

>shakB-transcript_prot
MSSVSVMDTLSFTVLSVIFIPFLLFFLSIVLLAYVGKTLGLQQIYVDFLVKVFEYGRENLEKQSKKQTKKVEETDSEETDDVDELDLVTEIDTDTLNESS
THLEPISSNGSISRSNSTHSLSNGNVDKKIQNGAPPLISRQDLILVPDPDQNYNGNNNVKTEGGKQILQRTRSFNTLKREFELADVLDYVKTGVEAIIED
QVTSRFEAEELKSWNLLTRTNRHYEFINWKITVIWIIGFIVRYTFLLPLRVLICFFGVMWLWICTLIVGFVPDSMGKRWLNQNTSIMCFQVLAASLSSVI
TYHNRENLPKRGICVANHTSPVDVLVLACDNPYALIGQRHGGFLGILQRALARASPHLWFERSEAKDREIVAMRLREHVSNPINPPILVFPEGTCINNTS
VMQFKKGSFEVGSVIYPVAIKYDPRFGDAFWNSSKYSMIQHLYLMMTSWAIVCDVWYLPPMYQNENESGADFANRVKRVIADQGGLVDLVWDGQLKRNKP
KTEWKERQQEEFSKRLKVE

Exon	Start	Stop	Strand
ACYPIG776292-Eric-RAE9	59493	60270	MINUS
ACYPIG776292-Eric-RAE8	55203	55530	MINUS
ACYPIG776292-Eric-RAE7	54942	55089	MINUS
ACYPIG776292-Eric-RAE6	54123	54258	MINUS
ACYPIG776292-Eric-RAE5	51708	51942	MINUS
ACYPIG776292-Eric-RAE4	50811	50927	MINUS
ACYPIG776292-Eric-RAE3	50107	50249	MINUS
ACYPIG776292-Eric-RAE2	49817	50026	MINUS
ACYPIG776292-Eric-RAE1	48735	48823	MINUS

Similarity

Transcript alignments

organism	tissue_type	clone_lib	Start	End	Strand	Name
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	54954	59755	-	EX628731
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	55199	59760	+	FF306176
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	55383	60086	-	EX647528
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	55383	60098	-	EX604661
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	55479	60179	-	EX607886
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	55489	60169	-	EX617689
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	55495	60177	-	EX626735
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	59485	60077	+	FF314252
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	59485	60092	+	FF326252
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	59485	60168	+	FF312886
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	59485	60168	+	FF312961
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	59485	60248	-	EX620191
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	59497	60270	-	EX612398
Acyrthosiphon pisum	head	ID0ACC	49808	50039	-	CV834320
Acyrthosiphon pisum	head	ID0ACC	49808	50039	-	CV838067
Acyrthosiphon pisum	head	ID0ACC	59485	60031	+	CV835979
Acyrthosiphon pisum	whole insect	ApMS	51708	51942	-	CN758391

Summary of organism

value	Number	frequency
Acyrthosiphon pisum	17	1.0

Summary of tissue_type

value	Number	frequency
whole insect	1	0.05882353
Whole body, nymphs and adults, winged and wingless	13	0.7647059
head	3	0.1764706

Summary of clone_lib

value	Number	frequency
Pea aphid whole body normalized full length cDNA library	13	0.7647059
ApMS	1	0.05882353
ID0ACC	3	0.1764706

Protein Similarities

query_name

analysis

hit_name

description

interpro_id

positions

OtherProperties