GRS - Gmod Report System - Chado Genome Report

Gene Report

ACYPI008911

mRNA Name	Scaffold	Start	Stop	Strand
XM_001944530	EQ116294	15258	28722	MINUS

>XM_001944530_mRNA
atgtatcgtcgtcaacttgccattaacttggaatttagcaagttcttaaaatgtatgtgggaagaaactgttaaatatccatggacaacatacaaaaatc
ctaatatcaaaagacagttcaaattaatgtcagtcttaggaacagatgctttacccgaagacaaattgaaaaaattagaggaaaccattgcggccatgga
aagtttgtacggcagggccaccattccagaatatggtgacaacaattcaaatcgaactttgagtttggaaccagatataaatgacatattggataaaagt
actgatgttaatgaactgaaacatgtgtgggtacaatggagagaggccacgggaaaaaaagttcgacctatgtacgcggaatacgtaaaactgtccaacg
aagcggccagattaaacaattacacggatactgcggaattttggattcgaggctacgacgtcgacgactttcggccgcgaatggaacgtttatggaatca
gatcaaacctctatacttgcagatacacgcctacgtgcgtagaaagcttagggagctatacggtgactcgatgatcacgaaaagaggacctataccagca
catctgctcggtgatatgtgggcacagtcgtgggaacgtttggatgattttacccgaccatatccaaccatcgacgatgtaaaccccacctcagccatga
taaatcagaattacactccgaaaaaaatgtttaaagtggccgaagagtttttcacatccttaaacttgagtgcaatgccccaagctttctgggaaaaatc
tattttggagaaaccaaatggtcgcgatctggtatgccatgcatcagcttgggacttttacgattctaatgacttcagaatcaagcaatgcacatcggtc
aattttatggattttataactgcccaccacgagatgggacacgtccaatacttcctacaatacaaagaccagccgttcatataccgcgaaggagctaacg
aaggtttccatgaagcgatcggagatacaattgctttgtctgtatccacgccaaagcatttgcataagatcggtctcttgcctaagaccagccgcacgta
cgaagctgatataaattatctgtacaagatcggtttagataaaatagcgtttttacctttcggatatttaatggatctatggaggtggaacgtattcaaa
ggtatcacgacggaagatcaatacaattgcgactggtggaaacttaaatattcttaccaaggaatcgagccaccggtgaccagaactgaaaaagattttg
acccgggatccaaataccacatcgttggaaacgtgccttacattaggtactttgtaagtttcatcgtacaatttcaatttcatcaagcattgtgcgagaa
agctggccagtttgatccaaaaaatccatcaagccaaccgttacacgaatgtgacatttatcaaagcacaaatgccggaaacgctttcaaagacatgttg
aaattaggatcatcgaaaccgtggtttgatgctatggaacaactaacggggcaaagagaaatggacgctggacctttgttgaactatttcaaccctctgt
acgaatggcttaaaaatgaaaataaaaggtccggagaatatattggctgggaaacaaataaaaaaatttgcttaaagaagggtgaaacaagtcaacctta
attttgatttattatgattttactctttttattagtgattgacagtattataatcatgtaactactatggtaaatcgtttataaactattcgatatgata
gttacactaggtttttatgtttcagtacatttttaatgtgtacattactatttcattaatttattaatatattaagatatgaatttaatttcataaataa
tttaaattttacccaacctaaaaataatgttttattgttattatttatttatttatttaaaaaataaaaattaatatacacttttc

>XM_001944530_prot
MYRRQLAINLEFSKFLKCMWEETVKYPWTTYKNPNIKRQFKLMSVLGTDALPEDKLKKLEETIAAMESLYGRATIPEYGDNNSNRTLSLEPDINDILDKS
TDVNELKHVWVQWREATGKKVRPMYAEYVKLSNEAARLNNYTDTAEFWIRGYDVDDFRPRMERLWNQIKPLYLQIHAYVRRKLRELYGDSMITKRGPIPA
HLLGDMWAQSWERLDDFTRPYPTIDDVNPTSAMINQNYTPKKMFKVAEEFFTSLNLSAMPQAFWEKSILEKPNGRDLVCHASAWDFYDSNDFRIKQCTSV
NFMDFITAHHEMGHVQYFLQYKDQPFIYREGANEGFHEAIGDTIALSVSTPKHLHKIGLLPKTSRTYEADINYLYKIGLDKIAFLPFGYLMDLWRWNVFK
GITTEDQYNCDWWKLKYSYQGIEPPVTRTEKDFDPGSKYHIVGNVPYIRYFVSFIVQFQFHQALCEKAGQFDPKNPSSQPLHECDIYQSTNAGNAFKDML
KLGSSKPWFDAMEQLTGQREMDAGPLLNYFNPLYEWLKNENKRSGEYIGWETNKKICLKKGETSQP

Exon	Start	Stop	Strand
ACYPI008911-RA-E1_0	28707	28722	MINUS
ACYPI008911-RA-E2_0	19874	20033	MINUS
ACYPI008911-RA-E3_0	19706	19806	MINUS
ACYPI008911-RA-E4_0	19401	19545	MINUS
ACYPI008911-RA-E5_0	19043	19235	MINUS
ACYPI008911-RA-E6_0	18858	18956	MINUS
ACYPI008911-RA-E7_0	18360	18655	MINUS
ACYPI008911-RA-E8_0	16833	17077	MINUS
ACYPI008911-RA-E9_0	16475	16718	MINUS
ACYPI008911-RA-E10_0	15818	15994	MINUS
ACYPI008911-RA-E11_0	15258	15578	MINUS

Similarity

Transcript alignments

organism	tissue_type	clone_lib	Start	End	Strand	Name
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	27650	27929	+	FF300621
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	15258	16717	+	FF313553
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	15260	16706	+	FF317772
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	19871	27927	-	EX602696
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	15259	16627	+	EX604121
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	19763	27929	-	EX604755
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	15259	16712	+	EX606441
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	19767	27930	-	EX608275
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	19762	27927	-	EX619009
Acyrthosiphon pisum	Whole body, nymphs and adults, winged and wingless	Pea aphid whole body normalized full length cDNA library	15259	16693	+	EX619658
Acyrthosiphon pisum	head	ID0ACC	16459	18660	-	CV833146
Acyrthosiphon pisum	whole body, nymphs and adults	Acyrthosiphon pisum, Pea Aphid	15278	16721	-	CN584282
Acyrthosiphon pisum	whole insect	ApMS	16821	18663	-	CN756414
Acyrthosiphon pisum	whole insect	ApMS	16459	17082	-	CN756427

Summary of organism

value	Number	frequency
Acyrthosiphon pisum	14	1.0

Summary of tissue_type

value	Number	frequency
whole insect	2	0.14285715
Whole body, nymphs and adults, winged and wingless	10	0.71428573
head	1	0.071428575
whole body, nymphs and adults	1	0.071428575

Summary of clone_lib

value	Number	frequency
Pea aphid whole body normalized full length cDNA library	10	0.71428573
Acyrthosiphon pisum, Pea Aphid	1	0.071428575
ApMS	2	0.14285715
ID0ACC	1	0.071428575

Protein Similarities

query_name

analysis

hit_name

description

interpro_id

positions

OtherProperties