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Gene Report
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ACYPI003020
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Description
| ID | Histone methyltransferase (Mes-4) with PWWP, PHD, PWWD, AWS, and SET domains |
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| Name | Histone methyltransferase (Mes-4) with PWWP, PHD, PWWD, AWS, and SET domains |
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| Synonym | Histone methyltransferase (Mes-4) with PWWP, PHD, PWWD, AWS, and SET domains | | Synonym | NSD1 | | Synonym | ACYPIG734701-deanrider | | Synonym | Mes-4 | | Synonym | ACYPI003020_1.1 |
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| owner | Name : Dean Rider
Institute : TAMU |
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| comments | Gene has complete protein homology support | | comments | Gene has partial EST/cDNA support |
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Genomic Position
| Start | Stop | Strand | | 1154 | 17547 | MINUS |
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Transcripts
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| mRNA Name | Scaffold | Start | Stop | Strand | Histone methyltransferase (Mes-4) with PWWP, PHD, PWWD, AWS, and SET domains-transcript | EQ117489 | 1154 | 17547 | MINUS |
>Histone methyltransferase (Mes-4) with PWWP, PHD, PWWD, AWS, and SET domains-transcript_mRNA
atggctgacattacagaaccggttaatgtttttttagaaactagccaagactatgttaacgataatggtcaaccaaatgcgatcgatgtcctaatttttg
acaacaatcctgtgctaccgaataatatatctcatttacatagcaactcattaagtagcgatgaggctgagaatacaccattgccgactgatatatctca
tttgaattgcaacttgttgagtaacaacaaggctatgaacataccactgttgtctgatacatgtcatttaaacagtgatgatgctaatatacctccgctg
actgatacatctaatctaaatagcaacttgttgagtagcgatgaggctttgaatacaccactactctcagagacatctcatttaaatagcgacgaggctg
agaatacaccactactctcggagacatctcatttaaatagtgacgaggctgagaatacaccactgctgtctgttacatctcatcaaaataacaacttgtt
gagtagcgatgaggctttgaatacaccactgctgttagatacatctaatttaaatagcgatgaggctgtgaatacaccactgctatcagatacatcttat
ttaaatagtaacgaggctatgaatacaccattgctgtttgatacaactcatttagatagtgacgaggctgtgaatacgccgctaccttctgattcatctc
atttaaataacgaggctgtcaatacactaactactccttcccttcaagattcactaaatgatatggatgtggatgtttttgattcattactagacaaacc
tgctagtactagttctaagcaaattgaggattacaagattggtgatattgtttgggctaaaattgggaagtatccatattggccaagcattatctgtgtt
gacccaacattgaatattcattataaagaaaaaaagcgtttattgatacatgtccgcttttgtaatgataaaggtagaagaagttgggccacaactactg
aaagttacaatggaaaatgtgaattacttttaaagtatcctaatactttaacttactttaagaatagtaaaaagcttattgatacgtgggaattggcagt
tgaagaagctgataatttgatgaaacttgatagagaatcgagattgatagaatttttcaaatctttttgtaattcagattctgtaactccatctgtttta
aataaatcatctgaaggcactgttgctgctttaaaagtacgtacttattcaagaaaaagatctctagcagttcctgaacaagataatgatttaaaaataa
tgaagactgaaaacatagctatgaattgtacatcatcaagatcaatagatattcctttattgtcaagatcagatgatgtggatagtactgtttctgattt
ttctatgagctatgcttttatggaagacttagatttaaaagtaaaacaggaaactgtaaaaaaaagaagatcaacaaaaacgtatccaccaaaaagttca
gttgccaataaacatgatttatcttattcaataatgaattctccagaaaataatgatagtaatagtgtatctgataatcaagataaatacccggttacaa
ccacaacatcttattctcgtttggtacctcatcataggaaactcgaaataagcatattagaaggagaatatgatcaagataatattatttttccaagttc
acgtcgttcaaaaaaaaaaaatacaattcatatcaattcatccaattctaagaaaacagttactagaaaacgacttattgaaaaagaaaactctactgga
agaaaatctactacagttaaacatgaaagtagcccagaaccagatacgacagaaagtgaagcttcttcaaaaaatgaaacatacagttcagttttcttaa
ctagttcacaaaacaaacagctttttacaaaaacctggaaaagagcgtgtgtagtttgtaaaaatattaaagacacagttaaatgtttgggcccatgtca
aagttattttcataaagaatgtttgaataagagcgaagaaagatataataagaccaaaagtataccaatgactaaaactaaaattaaaaaaacgtctggt
cgccgtaaaaggcattactcaaaaatcacacagaaaaatgaaggttctattgttgataatcctcagcttataagtaacttagaagaagaaaacactgcta
aattatttaaaaaagatgatgacgtgaaatctaattgcttgcagaccttatctcaaacccaatgttctagttatactaatgaagaaaccatatcgcttaa
tcaatttgaatcggatgaactatttaaaaatgataattgcattcttactgaaaatgataatactcaaagtgaattagaaagtgtaaatgaagattctatt
tcgggaacatctgaagaaaaaaatgttactccaactgtaccaatcaacattgatgaaaaaatatcattggataatttaaaatatatgtgcagcctatgta
aagctggtaaaacaaactgttttgtgtgtggcttggatattgacgatcctggacaaaagattgtttgtaaaatatattggcctcaatgtcagtggattca
aggatcacggaacaatgtccgatgtgtagtatgtccacatcatgtttgtcatttatgcatttcggataaccctaaaagttcatgtacaactcattttccc
gctgaaaaaataacccggtgtataaaatgcccaacagcctatcatagaagtgaatactgtttaccagctggttgtcaagtcttaacatacaatgatatta
tttgcagtcgacattttgaacctgttaaagtgcaaatatatcattataatgctacctggtgttttatttgtgcattaggaggtggttcattagttttctg
tgatttgtgtccatcgtcattccacattgattgtttaaatcaggatccatcagaatttgaaggcggttttacttgtgaagaatgtcaaactggacgatat
cctctatatggtgaaattgtatgggttaagattggaaactatagatggtggccagctcaaattattttcccaaatgaagttcctgatactgtaagtgcaa
tatcacattctgttggacaatttgctgttcgattttttggaacatatgattattattgggtaaatcgaggacgagtatttaactttcatgaaggggatga
tgagaatgttttaagaaaaaataatgtgaaggttatagataaagtgtttcaagattctattttagaagcagctcaagcccatagtgcttatattaaagaa
aaggaaaaaaatgatgctatagtagcaaaatcttttacgaagcctccaaaatttacaagaataaaattcaacaaacccattggcaatgtcaaaaatatgg
aatttgatattaccgcaatgactccctgtgaatgtgatcccacaaagccaaacccatgtggtcccggttctgattgtataaatagaatgcttatgtttga
atgtgaaccaaaagtatgtcctgctggagacaaatgtaataaccaaagatttgaaaaaacattgtaccctgctatggtcccgtttttgactaaaggtaga
ggttggggtcttaagacattagaagatataaaagaaggttcatttgtgatcgagtatgtcggtgatgtaattgatgaagaagaatttcaaaggagatgct
tggaaatgcatcaaaggaatgaacaaaattattattttttgactattgataattctagaacaattgacgctgggccaaaaggaaatttatcaaggtttat
gaaccattcgtgtgaacctaattgtgtaacccaaaaatggacagtgaatggagatactagaattggactttttgctttacaagacattccaactggtaca
gagctggtttttgattaccgtttgcagagttgcgcgggagtagagaaaaaaccttgtcaatgtggagctacaagatgttctaaatttattggagtgaaag
tggaagaagagaaaaagaaagtaatttcaagtaacgatgttgataagtgcaaggtttcttcaaaaaacaaacgaaaaccgttaaaactgaaggataatgt
ttctgactcagacaagtcaaaattatctaaagtaattagcaatgatcaaaagatatctacaactgaaaataaggttgaagcatctaatgctgagaaaatt
gtactttccaaaaaatccaaatctaaaacatctattggaaaatcatcaactacctcaaaaaatgcaaatttggaaccctcagaaacacctgctgttgtta
aagggaaatggaaaaattcagctaggaacatcgccaatatcaccaaagatgacattacagttgatgattctacgcaatccgaagaaaatgttggttcaaa
aagaaagctaaagaatggtttatcctcgctttcttcgagaaaacttctgataaaaaagaatctgataaaacaaaatttgtcacctgtgccatcacctatc
ctaaccaagttatcatcagctaaaactttatattcttctgaagataaagaacttggtgtgagttttataaatattaaggatataaaaacaagaatttcaa
gaaaacctactaaagaccttacaaacaatgaacagatgtttgagatattagaaaacataaatttaattcaatactttgtcattattgtaggcaatgatat
taagtctgacaaatcaacaagacctcaagaacaatctcggaataatttaactagactggcaaaaagtagacatttatttttatccaaa |
>Histone methyltransferase (Mes-4) with PWWP, PHD, PWWD, AWS, and SET domains-transcript_prot
MADITEPVNVFLETSQDYVNDNGQPNAIDVLIFDNNPVLPNNISHLHSNSLSSDEAENTPLPTDISHLNCNLLSNNKAMNIPLLSDTCHLNSDDANIPPL
TDTSNLNSNLLSSDEALNTPLLSETSHLNSDEAENTPLLSETSHLNSDEAENTPLLSVTSHQNNNLLSSDEALNTPLLLDTSNLNSDEAVNTPLLSDTSY
LNSNEAMNTPLLFDTTHLDSDEAVNTPLPSDSSHLNNEAVNTLTTPSLQDSLNDMDVDVFDSLLDKPASTSSKQIEDYKIGDIVWAKIGKYPYWPSIICV
DPTLNIHYKEKKRLLIHVRFCNDKGRRSWATTTESYNGKCELLLKYPNTLTYFKNSKKLIDTWELAVEEADNLMKLDRESRLIEFFKSFCNSDSVTPSVL
NKSSEGTVAALKVRTYSRKRSLAVPEQDNDLKIMKTENIAMNCTSSRSIDIPLLSRSDDVDSTVSDFSMSYAFMEDLDLKVKQETVKKRRSTKTYPPKSS
VANKHDLSYSIMNSPENNDSNSVSDNQDKYPVTTTTSYSRLVPHHRKLEISILEGEYDQDNIIFPSSRRSKKKNTIHINSSNSKKTVTRKRLIEKENSTG
RKSTTVKHESSPEPDTTESEASSKNETYSSVFLTSSQNKQLFTKTWKRACVVCKNIKDTVKCLGPCQSYFHKECLNKSEERYNKTKSIPMTKTKIKKTSG
RRKRHYSKITQKNEGSIVDNPQLISNLEEENTAKLFKKDDDVKSNCLQTLSQTQCSSYTNEETISLNQFESDELFKNDNCILTENDNTQSELESVNEDSI
SGTSEEKNVTPTVPINIDEKISLDNLKYMCSLCKAGKTNCFVCGLDIDDPGQKIVCKIYWPQCQWIQGSRNNVRCVVCPHHVCHLCISDNPKSSCTTHFP
AEKITRCIKCPTAYHRSEYCLPAGCQVLTYNDIICSRHFEPVKVQIYHYNATWCFICALGGGSLVFCDLCPSSFHIDCLNQDPSEFEGGFTCEECQTGRY
PLYGEIVWVKIGNYRWWPAQIIFPNEVPDTVSAISHSVGQFAVRFFGTYDYYWVNRGRVFNFHEGDDENVLRKNNVKVIDKVFQDSILEAAQAHSAYIKE
KEKNDAIVAKSFTKPPKFTRIKFNKPIGNVKNMEFDITAMTPCECDPTKPNPCGPGSDCINRMLMFECEPKVCPAGDKCNNQRFEKTLYPAMVPFLTKGR
GWGLKTLEDIKEGSFVIEYVGDVIDEEEFQRRCLEMHQRNEQNYYFLTIDNSRTIDAGPKGNLSRFMNHSCEPNCVTQKWTVNGDTRIGLFALQDIPTGT
ELVFDYRLQSCAGVEKKPCQCGATRCSKFIGVKVEEEKKKVISSNDVDKCKVSSKNKRKPLKLKDNVSDSDKSKLSKVISNDQKISTTENKVEASNAEKI
VLSKKSKSKTSIGKSSTTSKNANLEPSETPAVVKGKWKNSARNIANITKDDITVDDSTQSEENVGSKRKLKNGLSSLSSRKLLIKKNLIKQNLSPVPSPI
LTKLSSAKTLYSSEDKELGVSFINIKDIKTRISRKPTKDLTNNEQMFEILENINLIQYFVIIVGNDIKSDKSTRPQEQSRNNLTRLAKSRHLFLS |
| Exon | Start | Stop | Strand | | ACYPIE734726-deanrider | 16622 | 17547 | MINUS | | ACYPIE734727-deanrider | 16212 | 16337 | MINUS | | ACYPIE734728-deanrider | 16039 | 16122 | MINUS | | ACYPIE734729-deanrider | 15871 | 15965 | MINUS | | ACYPIE734730-deanrider | 15381 | 15806 | MINUS | | ACYPIE734731-deanrider | 13876 | 13960 | MINUS | | ACYPIE734732-deanrider | 13288 | 13354 | MINUS | | ACYPIE734733-deanrider | 12398 | 13171 | MINUS | | ACYPIE734734-deanrider | 11790 | 11964 | MINUS | | ACYPIE734735-deanrider | 11601 | 11730 | MINUS | | ACYPIE734736-deanrider | 11371 | 11537 | MINUS | | ACYPIE734737-deanrider | 10408 | 10559 | MINUS | | ACYPIE734738-deanrider | 10108 | 10252 | MINUS | | ACYPIE734739-deanrider | 9900 | 10046 | MINUS | | ACYPIE734740-deanrider | 9659 | 9811 | MINUS | | ACYPIE734741-deanrider | 9436 | 9593 | MINUS | | ACYPIE734742-deanrider | 8913 | 9121 | MINUS | | ACYPIE734743-deanrider | 8171 | 8261 | MINUS | | ACYPIE734744-deanrider | 7827 | 7908 | MINUS | | ACYPIE734745-deanrider | 7655 | 7742 | MINUS | | ACYPIE734746-deanrider | 7503 | 7590 | MINUS | | ACYPIE734747-deanrider | 2675 | 2783 | MINUS | | ACYPIE734748-deanrider | 1578 | 1671 | MINUS | | ACYPIE734749-deanrider | 1375 | 1516 | MINUS | | ACYPIE734750-deanrider | 1154 | 1253 | MINUS |
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Similarity
| organism | tissue_type | clone_lib |
Transcript alignmentsStart | End | Strand | Name | | Acyrthosiphon pisum | Whole body, nymphs and adults, winged and wingless | Pea aphid whole body normalized full length cDNA library | 2881 | 3323 | + | FF313767 |
| Acyrthosiphon pisum | Whole body, nymphs and adults, winged and wingless | Pea aphid whole body normalized full length cDNA library | 13882 | 16064 | + | EX650607 |
| Acyrthosiphon pisum | Whole body, nymphs and adults, winged and wingless | Pea aphid whole body normalized full length cDNA library | 2881 | 3323 | - | FF313767 |
| Acyrthosiphon pisum | digestive tract | ID0AFF | 15378 | 15811 | - | DV742465 |
Summary of organism| value | Number | frequency | | Acyrthosiphon pisum | 4 | 1.0 |
Summary of tissue_type| value | Number | frequency | | Whole body, nymphs and adults, winged and wingless | 3 | 0.75 | | digestive tract | 1 | 0.25 |
Summary of clone_lib| value | Number | frequency | | Pea aphid whole body normalized full length cDNA library | 3 | 0.75 | | ID0AFF | 1 | 0.25 |
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Protein Similarities| query_name | analysis | hit_name | description | interpro_id | go | positions |
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OtherProperties
| date | Sun Sep 28 19:54:12 CDT 2008 | | problem | false |
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Gmod Report System - copyright INRA 2009 |
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