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Gene Report
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ACYPI002722
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Description
| ID | Histone methyltransferase with SET domain similar to pr-set7 |
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| Name | Histone methyltransferase with SET domain similar to pr-set7 |
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| Synonym | Histone methyltransferase with SET domain similar to pr-set7 | | Synonym | ACYPIG579695-deanrider | | Synonym | ACYPI002722_1.1 |
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| owner | Name : Dean Rider
Institute : TAMU |
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| comments | Gene has partial EST/cDNA support |
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Genomic Position
| Start | Stop | Strand | | 433 | 8931 | MINUS |
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Transcripts
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| mRNA Name | Scaffold | Start | Stop | Strand | Histone methyltransferase with SET domain similar to pr-set7-transcript | EQ125307 | 433 | 8931 | MINUS |
>Histone methyltransferase with SET domain similar to pr-set7-transcript_mRNA
actctaccatttctcccgatgatttttaaaacatataaaaaaatgtacggaaaagttacaaacgacaattttttcccatcaaaatataaatgctattaag
cattcactttcaacctatgagcattgagcacaagagaggttgatgaattgacatcttgacagttattagttaagtgatactgagatttaaaattaaaaga
attaggtacctactcgtgtttaattccgagcaccctcaaaatggttaaaaataaaagtagccgatcggccactcaaaatagcagtgcaacaaataaacgc
cctcaaggatcaattaaaaaatattgtaccgaaaaaaagactccatcaaaggataatgaaaaagtcatcaaggatatgccacttatttctgatactgcat
ttaattcaaaagcagattttaatcagtctcctctatcgtcaaaattaaatagtagtcataaaataagtttaaatgtaaaacatataaacgatacatctaa
taataagcaacaaaaagtcactgcattttttcctatccgaagaagcgctcgtaaaacaaaaaatgtagtcaatgaagaaaaacaattagccttagaagaa
gcgattgcctcacaaaatgaagatggattaaaaataactgtattccctaataaaggtcgtggcatagtagcaggtaaagattttactcgtggagagtatg
ttgttgaatattctggagagttaatttatgttcaagaagctcgtaaaagggaagccatttattctcaagataccaccaccggttgttacatgtattattt
caaatatggttcaacacattactgtattgatgcaacacctgaaagttcaagacttggcagacttgtaaatcattcaagatttggtaatcttgtacccaaa
attgtagaagtggccgggctacccaggattattttgatcgcaaaatgtgatattaaacgggatgaagaattaacctatgattatggtgatcgtagtaaag
aatctctcatcaatcatccatggcttgcttattga |
>Histone methyltransferase with SET domain similar to pr-set7-transcript_prot
MVKNKSSRSATQNSSATNKRPQGSIKKYCTEKKTPSKDNEKVIKDMPLISDTAFNSKADFNQSPLSSKLNSSHKISLNVKHINDTSNNKQQKVTAFFPIR
RSARKTKNVVNEEKQLALEEAIASQNEDGLKITVFPNKGRGIVAGKDFTRGEYVVEYSGELIYVQEARKREAIYSQDTTTGCYMYYFKYGSTHYCIDATP
ESSRLGRLVNHSRFGNLVPKIVEVAGLPRIILIAKCDIKRDEELTYDYGDRSKESLINHPWLAY |
| Exon | Start | Stop | Strand | | ACYPIE579695-deanrider | 8681 | 8931 | MINUS | | ACYPIE579696-deanrider | 8507 | 8593 | MINUS | | ACYPIE579697-deanrider | 1986 | 2059 | MINUS | | ACYPIE579698-deanrider | 1867 | 1925 | MINUS | | ACYPIE579699-deanrider | 1091 | 1257 | MINUS | | ACYPIE579700-deanrider | 836 | 1027 | MINUS | | ACYPIE579701-deanrider | 433 | 644 | MINUS |
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Similarity
| organism | tissue_type | clone_lib |
Transcript alignmentsStart | End | Strand | Name | | Acyrthosiphon pisum | Whole body, nymphs and adults, winged and wingless | Pea aphid whole body normalized full length cDNA library | 8674 | 8928 | + | FF312680 |
| Acyrthosiphon pisum | Whole body, nymphs and adults, winged and wingless | Pea aphid whole body normalized full length cDNA library | 8674 | 8913 | + | FF303927 |
Summary of organism| value | Number | frequency | | Acyrthosiphon pisum | 2 | 1.0 |
Summary of tissue_type| value | Number | frequency | | Whole body, nymphs and adults, winged and wingless | 2 | 1.0 |
Summary of clone_lib| value | Number | frequency | | Pea aphid whole body normalized full length cDNA library | 2 | 1.0 |
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Protein Similarities| query_name | analysis | hit_name | description | interpro_id | go | positions |
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OtherProperties
| date | Mon Sep 29 17:43:53 CDT 2008 | | problem | false |
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Gmod Report System - copyright INRA 2009 |
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